OBO Foundry dashboard analysis

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/usr/local/lib/python3.8/dist-packages/pandas/core/arrays/categorical.py:2630: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Removing unused categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    175
OWL/XML Syntax      4
RDF/XML             2
unknown             1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

	count	mean	std	min	25%	50%	75%	max
AnnotationAssertion	181	162656.027473	817946.370624	0.0	1408.50	7093.0	28479.75	9810543.0
Declaration	181	29541.049451	186653.263751	0.0	437.00	1265.0	5259.75	2401853.0
SubClassOf	176	39924.082418	212769.872275	0.0	340.25	1392.5	6704.75	2401824.0
EquivalentClasses	125	2803.780220	13711.038895	0.0	0.00	26.0	216.50	126209.0
TransitiveObjectProperty	116	6.598901	11.556663	0.0	0.00	2.0	6.00	69.0
SubAnnotationPropertyOf	114	8.642857	18.098531	0.0	0.00	2.0	7.00	119.0
SubObjectPropertyOf	104	76.236264	453.553330	0.0	0.00	2.0	48.75	6017.0
DisjointClasses	95	31.351648	95.439648	0.0	0.00	1.0	21.00	625.0
ObjectPropertyRange	86	48.296703	445.761153	0.0	0.00	0.0	19.75	6016.0
ObjectPropertyDomain	86	48.648352	445.791465	0.0	0.00	0.0	19.00	6016.0
InverseObjectProperties	83	26.197802	222.759054	0.0	0.00	0.0	14.75	3005.0
SubPropertyChainOf	69	10.532967	27.204089	0.0	0.00	0.0	2.00	148.0
ClassAssertion	63	80.120879	475.818012	0.0	0.00	0.0	18.00	5528.0
FunctionalObjectProperty	50	11.829670	148.197228	0.0	0.00	0.0	1.00	2000.0
SymmetricObjectProperty	47	1.631868	8.326996	0.0	0.00	0.0	1.00	79.0
DataPropertyRange	43	12.093407	149.241127	0.0	0.00	0.0	0.00	2014.0
DataPropertyDomain	37	12.021978	149.246726	0.0	0.00	0.0	0.00	2014.0
IrrefexiveObjectProperty	37	0.609890	2.321295	0.0	0.00	0.0	0.00	26.0
AnnotationPropertyRangeOf	35	2.197802	13.817052	0.0	0.00	0.0	0.00	129.0
DifferentIndividuals	34	0.675824	4.199364	0.0	0.00	0.0	0.00	56.0
EquivalentObjectProperties	29	1.554945	5.694308	0.0	0.00	0.0	0.00	36.0
SubDataPropertyOf	28	11.807692	149.271866	0.0	0.00	0.0	0.00	2014.0
FunctionalDataProperty	23	0.483516	1.533152	0.0	0.00	0.0	0.00	11.0
Rule	21	1.829670	5.957362	0.0	0.00	0.0	0.00	29.0
AsymmetricObjectProperty	21	33.467033	445.835570	0.0	0.00	0.0	0.00	6015.0
InverseFunctionalObjectProperty	20	0.170330	0.564707	0.0	0.00	0.0	0.00	4.0
DisjointObjectProperties	17	0.236264	1.129320	0.0	0.00	0.0	0.00	10.0
ObjectPropertyAssertion	14	12.489011	102.394413	0.0	0.00	0.0	0.00	1027.0
ReflexiveObjectProperty	11	0.109890	0.503042	0.0	0.00	0.0	0.00	4.0
AnnotationPropertyDomain	11	0.274725	1.625528	0.0	0.00	0.0	0.00	17.0
DisjointUnion	6	0.082418	0.555056	0.0	0.00	0.0	0.00	5.0
DataPropertyAssertion	5	0.181319	1.609736	0.0	0.00	0.0	0.00	20.0
DatatypeDefinition	3	0.214286	1.987034	0.0	0.00	0.0	0.00	19.0
SameIndividual	1	0.005495	0.074125	0.0	0.00	0.0	0.00	1.0

Breakdown of used OWL Class Expression constructs

	count	mean	std	min	25%	50%	75%	max
Class	180	122676.274725	627381.441765	0.0	1371.00	5526.0	20043.75	7205474.0
ObjectSomeValuesFrom	161	18485.296703	87818.826713	0.0	41.25	469.5	2856.75	841130.0
ObjectIntersectionOf	121	4580.774725	20855.186358	0.0	0.00	32.5	458.25	201964.0
ObjectUnionOf	87	28.472527	90.564569	0.0	0.00	0.0	16.75	767.0
ObjectAllValuesFrom	73	29.445055	148.068839	0.0	0.00	0.0	11.75	1764.0
ObjectComplementOf	65	13.609890	82.526919	0.0	0.00	0.0	2.00	1058.0
ObjectMinCardinality	58	2.494505	8.407933	0.0	0.00	0.0	1.00	57.0
ObjectExactCardinality	47	9.741758	88.949202	0.0	0.00	0.0	1.00	1193.0
ObjectOneOf	44	5.175824	34.581825	0.0	0.00	0.0	0.00	273.0
DataMinCardinality	25	0.241758	0.686744	0.0	0.00	0.0	0.00	4.0
DataSomeValuesFrom	23	7.010989	64.630013	0.0	0.00	0.0	0.00	859.0
DataExactCardinality	23	0.554945	1.653642	0.0	0.00	0.0	0.00	7.0
ObjectMaxCardinality	21	0.868132	4.761050	0.0	0.00	0.0	0.00	45.0
ObjectHasValue	20	144.120879	1586.405314	0.0	0.00	0.0	0.00	21288.0
ObjectHasSelf	18	0.247253	0.980116	0.0	0.00	0.0	0.00	6.0
DataHasValue	18	120.494505	1577.828379	0.0	0.00	0.0	0.00	21288.0
DataAllValuesFrom	3	0.104396	1.032661	0.0	0.00	0.0	0.00	13.0
DataMaxCardinality	2	0.010989	0.104539	0.0	0.00	0.0	0.00	1.0

OBO Score (Experimental)

	ontology	score	score_dash	score_impact
120	omo	0.947	0.938	0.956
7	bfo	0.835	0.883	0.786
149	ro	0.799	0.863	0.736
132	pato	0.721	0.985	0.456
63	go	0.673	0.847	0.500
19	cl	0.604	0.928	0.280
144	pr	0.581	0.926	0.236
110	obi	0.575	0.727	0.423
102	ncbitaxon	0.564	0.743	0.385
165	uberon	0.536	0.705	0.368
34	doid	0.532	0.939	0.126
113	ogms	0.519	0.796	0.242
68	hp	0.503	0.885	0.121
172	wbls	0.500	0.989	0.011
13	chebi	0.499	0.586	0.412
35	dpo	0.493	0.986	0.000
162	trans	0.487	0.948	0.027
139	plana	0.485	0.966	0.005
128	opl	0.482	0.949	0.016
111	obib	0.480	0.944	0.016
43	envo	0.478	0.780	0.176
51	fbdv	0.477	0.937	0.016
62	gno	0.477	0.949	0.005
138	phipo	0.474	0.936	0.011
39	eco	0.474	0.943	0.005
58	gecko	0.469	0.939	0.000
57	fypo	0.468	0.936	0.000
178	zeco	0.468	0.935	0.000
72	iao	0.467	0.934	0.000
159	symp	0.466	0.888	0.044
65	hancestro	0.462	0.907	0.016
16	chmo	0.459	0.868	0.049
45	eupath	0.457	0.897	0.016
134	pco	0.453	0.795	0.110
173	wbphenotype	0.451	0.891	0.011
125	ontoavida	0.450	0.899	0.000
122	omrse	0.449	0.804	0.093
31	ddpheno	0.449	0.893	0.005
44	epio	0.447	0.894	0.000
96	mp	0.446	0.848	0.044
12	cdno	0.445	0.890	0.000
133	pcl	0.445	0.890	0.000
99	mro	0.445	0.889	0.000
8	bspo	0.444	0.789	0.099
75	ido	0.444	0.766	0.121
41	ecto	0.438	0.860	0.016
181	zp	0.438	0.864	0.011
179	zfa	0.435	0.848	0.022
166	uo	0.434	0.703	0.165
74	ico	0.432	0.838	0.027
141	po	0.430	0.768	0.093
1	aism	0.429	0.842	0.016
140	planp	0.425	0.846	0.005
151	rxno	0.424	0.844	0.005
158	swo	0.424	0.844	0.005
155	so	0.423	0.680	0.165
101	nbo	0.422	0.735	0.110
145	psdo	0.421	0.843	0.000
25	colao	0.421	0.842	0.000
33	disdriv	0.420	0.840	0.000
170	vto	0.419	0.839	0.000
130	ornaseq	0.416	0.832	0.000
6	bco	0.416	0.827	0.005
84	mf	0.413	0.792	0.033
177	xpo	0.410	0.815	0.005
46	exo	0.407	0.791	0.022
95	mop	0.406	0.789	0.022
47	fao	0.406	0.795	0.016
148	rbo	0.405	0.804	0.005
174	xao	0.404	0.792	0.016
37	duo	0.403	0.790	0.016
108	oba	0.402	0.781	0.022
4	apollo_sv	0.401	0.709	0.093
38	ecao	0.400	0.800	0.000
40	ecocore	0.400	0.789	0.011
127	oostt	0.398	0.784	0.011
0	agro	0.398	0.790	0.005
175	xco	0.398	0.784	0.011
157	stato	0.398	0.715	0.082
107	oarcs	0.397	0.793	0.000
146	pso	0.396	0.792	0.000
22	clyh	0.395	0.789	0.000
50	fbcv	0.395	0.768	0.022
26	cro	0.394	0.788	0.000
20	clao	0.393	0.785	0.000
56	fovt	0.393	0.786	0.000
117	ohpi	0.392	0.783	0.000
143	ppo	0.392	0.784	0.000
167	upheno	0.390	0.742	0.038
116	ohmi	0.390	0.774	0.005
61	geo	0.389	0.734	0.044
79	lepao	0.388	0.776	0.000
69	hsapdv	0.387	0.747	0.027
109	obcs	0.382	0.741	0.022
60	geno	0.381	0.751	0.011
137	peco	0.380	0.727	0.033
2	amphx	0.380	0.760	0.000
30	ddanat	0.377	0.742	0.011
97	mpath	0.376	0.714	0.038
87	mfomd	0.374	0.733	0.016
171	wbbt	0.374	0.738	0.011
160	taxrank	0.374	0.738	0.011
86	mfoem	0.374	0.744	0.005
81	mamo	0.374	0.748	0.000
67	hom	0.374	0.748	0.000
18	cio	0.374	0.748	0.000
136	pdumdv	0.374	0.748	0.000
98	mpio	0.374	0.743	0.005
77	kisao	0.374	0.748	0.000
15	chiro	0.374	0.748	0.000
14	cheminf	0.374	0.749	0.000
152	sbo	0.374	0.748	0.000
76	ino	0.373	0.730	0.016
169	vt	0.373	0.730	0.016
36	dron	0.373	0.664	0.082
54	fobi	0.373	0.747	0.000
71	htn	0.373	0.746	0.000
123	one	0.373	0.746	0.000
124	ons	0.372	0.728	0.016
32	dideo	0.371	0.732	0.011
28	cto	0.370	0.740	0.000
52	fideo	0.370	0.740	0.000
42	emapa	0.370	0.735	0.005
180	zfs	0.370	0.736	0.005
118	olatdv	0.369	0.738	0.000
91	mmo	0.369	0.727	0.011
114	ogsf	0.369	0.739	0.000
154	sepio	0.369	0.734	0.005
3	apo	0.368	0.736	0.000
83	mco	0.368	0.737	0.000
89	miapa	0.368	0.736	0.000
82	maxo	0.368	0.721	0.016
94	mondo	0.368	0.699	0.038
49	fbbt	0.368	0.720	0.016
176	xlmod	0.367	0.735	0.000
92	mmusdv	0.367	0.735	0.000
142	poro	0.366	0.732	0.000
129	opmi	0.365	0.703	0.027
115	ohd	0.365	0.731	0.000
106	oae	0.365	0.642	0.088
27	cteno	0.364	0.728	0.000
156	spd	0.364	0.729	0.000
131	ovae	0.364	0.729	0.000
161	to	0.364	0.723	0.005
85	mfmo	0.363	0.726	0.000
23	cmo	0.362	0.680	0.044
70	hso	0.360	0.721	0.000
11	cdao	0.359	0.713	0.005
103	ncit	0.357	0.588	0.126
29	cvdo	0.356	0.702	0.011
78	labo	0.356	0.713	0.000
147	pw	0.353	0.695	0.011
121	omp	0.353	0.684	0.022
104	ncro	0.351	0.692	0.011
24	cob	0.350	0.689	0.011
88	mi	0.349	0.682	0.016
105	nomen	0.348	0.697	0.000
80	ma	0.346	0.693	0.000
48	fbbi	0.344	0.687	0.000
164	txpo	0.344	0.689	0.000
119	omit	0.343	0.664	0.022
163	tto	0.342	0.684	0.000
66	hao	0.341	0.681	0.000
9	bto	0.338	0.649	0.027
150	rs	0.337	0.669	0.005
135	pdro	0.334	0.645	0.022
90	micro	0.332	0.658	0.005
55	foodon	0.328	0.580	0.077
73	iceo	0.328	0.655	0.000
64	gsso	0.327	0.637	0.016
168	vo	0.326	0.571	0.082
59	genepio	0.325	0.617	0.033
21	clo	0.322	0.577	0.066
126	ontoneo	0.321	0.641	0.000
5	aro	0.321	0.620	0.022
112	ogg	0.318	0.587	0.049
53	flopo	0.318	0.630	0.005
153	scdo	0.317	0.633	0.000
100	ms	0.311	0.611	0.011
17	cido	0.302	0.599	0.005
93	mod	0.295	0.580	0.011
10	caro	0.000	0.000	0.000

OBO Score Summary

	count	mean	std	min	25%	50%	75%	max
score	182.0	0.408225	0.091805	0.0	0.36625	0.3885	0.43800	0.947
score_dash	182.0	0.765324	0.110615	0.0	0.71425	0.7475	0.83875	0.989
score_impact	182.0	0.051148	0.132150	0.0	0.00000	0.0110	0.02700	0.956

OBO dependency graph